ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5no1A3 - ECOD Domain | ECOD

ECOD/Domains/e5no1A3

e5no1A3

UID: 002097840

PDB

Range: A:9-108
PDB: 5NO1 chain A(all domains)
UniProt: P14350 (all domains)
Gene: pol

Molecule: Integrase

3D Structure

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Related Domains

Browse other domains in Integrase_H2C2 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilyIntegrase_H2C2(101.1.1.76)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF17921Integrase_H2C2

Integrase zinc binding domain

ClanCL0361C2H2-zf

External Links

ECOD PDB View: 5NO1 RCSB PDB: 5NO1 PDBe: 5NO1 UniProt: P14350

Downloads

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