ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5no1B1 - ECOD Domain | ECOD

ECOD/Domains/e5no1B1

e5no1B1

UID: 002097841

PDB

Range: B:116-297
PDB: 5NO1 chain B(all domains)
UniProt: P14350 (all domains)
Gene: pol

Molecule: Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ion

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 5NO1 RCSB PDB: 5NO1 PDBe: 5NO1 UniProt: P14350

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.