ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xpcD1 - ECOD Domain | ECOD

ECOD/Domains/e5xpcD1

e5xpcD1

UID: 002099118

PDB

Range: D:45-130
PDB: 5XPC chain D(all domains)
UniProt: Q9V3H0 (all domains)
Gene: Drep4

Molecule: DNAation factor-related protein 4

3D Structure

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Related Domains

Browse other domains in CIDE-N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyCIDE-N(221.1.1.10)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

CIDE-N domain

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 5XPC RCSB PDB: 5XPC PDBe: 5XPC UniProt: Q9V3H0

Downloads

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