ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jv4C1 - ECOD Domain | ECOD

ECOD/Domains/e5jv4C1

e5jv4C1

UID: 002099296

PDB

Range: C:5-142
PDB: 5JV4 chain C(all domains)
UniProt: A0R6F1 (all domains)
Gene: MSMEG_6526

Molecule: Pyridoxamine 5'-phosphate oxidase-like FMN-binding protein

3D Structure

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Related Domains

Browse other domains in Putative_PNPOx →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPutative_PNPOx(1.1.5.8)

Ligands

in contact, ≤ 4 Å

Coenzyme F420F42
drugDrugBank DB03913
(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-Diol

Pfam Families

PF01243PNPOx_N

Pyridoxamine 5'-phosphate oxidase

ClanCL0336FMN-binding

External Links

ECOD PDB View: 5JV4 RCSB PDB: 5JV4 PDBe: 5JV4 UniProt: A0R6F1

Downloads

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DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.