ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5npdA1 - ECOD Domain | ECOD

ECOD/Domains/e5npdA1

e5npdA1

UID: 002099540

PDB

Range: A:669-816
PDB: 5NPD chain A(all domains)
UniProt: B3PEE6 (all domains)
Gene: agd31B

Molecule: Oligosaccharide 4-alpha-D-glucosyltransferase

3D Structure

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Related Domains

Browse other domains in DUF5110 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupPutative glucosidase YicI, C-terminal domain(4178)

HH-groupPutative glucosidase YicI, C-terminal domain(4178.1)

TT-groupPutative glucosidase YicI, C-terminal domain(4178.1.1)

FFamilyDUF5110(4178.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives (Sulfate ion, 1,2-ETHANEDIOL, Oxalate ion, …)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO
Oxalate ionOXL

Pfam Families

PF17137DUF5110

Domain of unknown function (DUF5110)

External Links

ECOD PDB View: 5NPD RCSB PDB: 5NPD PDBe: 5NPD UniProt: B3PEE6

Downloads

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Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.