ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5npfA1 - ECOD Domain | ECOD

ECOD/Domains/e5npfA1

e5npfA1

UID: 002099548

PDB

Range: A:451-485,A:505-801
PDB: 5NPF chain A(all domains)
UniProt: F6BL85 (all domains)
Gene: Thexy_2211

Molecule: Glucosylceramidase

3D Structure

Loading viewer...

Related Domains

Browse other domains in DUF608 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyDUF608(109.2.1.14)

Ligands

in contact, ≤ 4 Å

[(1~{R},2~{R},3~{R},4~{S},5~{R})-2-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)cyclohexyl] hydrogen sulfate945
Calcium ionCA
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOL

Pfam Families

PF04685GH116_catalytic

Glycosyl-hydrolase family 116, catalytic region

ClanCL00596_Hairpin

External Links

ECOD PDB View: 5NPF RCSB PDB: 5NPF PDBe: 5NPF UniProt: F6BL85

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.