ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5x1fF1 - ECOD Domain | ECOD

ECOD/Domains/e5x1fF1

e5x1fF1

UID: 002100076

PDB

Range: F:1-98
PDB: 5X1F chain F(all domains)
UniProt: P00428 (all domains)
Gene: COX5B

Molecule: Cytochrome c oxidase subunit 5B, mitochondrial

3D Structure

Loading viewer...

Related Domains

Browse other domains in COX5B →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupCytochrome c oxidase Subunit F(375.1.8)

FFamilyCOX5B(375.1.8.1)

Ligands

in contact, ≤ 4 Å

(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATEPEK
Zinc ionZN
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

Cytochrome c oxidase subunit Vb

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 5X1F RCSB PDB: 5X1F PDBe: 5X1F UniProt: P00428

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.