ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5lhcB3 - ECOD Domain | ECOD

ECOD/Domains/e5lhcB3

e5lhcB3

UID: 002101012

PDB

Range: B:379-604
PDB: 5LHC chain B(all domains)
UniProt: Q8GCA3 (all domains)

Molecule: Nicking endonuclease N.BspD6I

3D Structure

Loading viewer...

Related Domains

Browse other domains in RE_AlwI →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupRestriction endonuclease-like(2008.1)

TT-groupRestriction endonuclease-like(2008.1.1)

FFamilyRE_AlwI(2008.1.1.45)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09491RE_AlwI

AlwI restriction endonuclease

ClanCL0236PDDEXK

External Links

ECOD PDB View: 5LHC RCSB PDB: 5LHC PDBe: 5LHC UniProt: Q8GCA3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure