ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5lmfA1 - ECOD Domain | ECOD

ECOD/Domains/e5lmfA1

e5lmfA1

UID: 002101070

PDB

Range: A:472-796
PDB: 5LMF chain A(all domains)
UniProt: P25644 (all domains)
Gene: PAT1

Molecule: DNA topoisomerase 2-associated protein PAT1

3D Structure

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Related Domains

Browse other domains in PAT1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyPAT1(109.4.1.138)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

Topoisomerase II-associated protein PAT1

ClanCL0020TPR

External Links

ECOD PDB View: 5LMF RCSB PDB: 5LMF PDBe: 5LMF UniProt: P25644

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.