ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5lmgA1 - ECOD Domain | ECOD

ECOD/Domains/e5lmgA1

e5lmgA1

UID: 002101072

PDB

Range: A:468-796
PDB: 5LMG chain A(all domains)
UniProt: P25644 (all domains)
Gene: PAT1

Molecule: DNA topoisomerase 2-associated protein PAT1

3D Structure

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Related Domains

Browse other domains in PAT1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyPAT1(109.4.1.138)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives (Tromethamine, 1,2-ETHANEDIOL)

TromethamineTRS
DrugBank DB03754
1,2-ETHANEDIOL

Pfam Families

Topoisomerase II-associated protein PAT1

ClanCL0020TPR

External Links

ECOD PDB View: 5LMG RCSB PDB: 5LMG PDBe: 5LMG UniProt: P25644

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.