ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5lmmM2 - ECOD Domain | ECOD

ECOD/Domains/e5lmmM2

e5lmmM2

UID: 002101083

PDB

Range: M:98-337,M:407-489
PDB: 5LMM chain M(all domains)
UniProt: P0ACD8 (all domains)
Gene: hyaB

Molecule: Hydrogenase-1 large chain

3D Structure

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Related Domains

Browse other domains in NiFeSe_Hases →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025)

HH-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025.1)

TT-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025.1.1)

FFamilyNiFeSe_Hases(4025.1.1.2)

Ligands

in contact, ≤ 4 Å

FE3-S4 CLUSTERF3S
Lithium ionLI
metal
CARBONMONOXIDE-(DICYANO) IRONFCO

Pfam Families

PF00374NiFeSe_Hases

Nickel-dependent hydrogenase

External Links

ECOD PDB View: 5LMM RCSB PDB: 5LMM PDBe: 5LMM UniProt: P0ACD8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

within 5 Å only

FE4-S3 CLUSTERSF3

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.