ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nj4C1 - ECOD Domain | ECOD

ECOD/Domains/e5nj4C1

e5nj4C1

UID: 002101187

PDB

Range: C:1-332
PDB: 5NJ4 chain C(all domains)
UniProt: P07173 (all domains)
Gene: pufC

Molecule: Photosynthetic reaction center cytochrome c subunit

3D Structure

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Related Domains

Browse other domains in CytoC_RC →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupMultiheme cytochromes(139)

HH-groupPhotosynthetic reaction centre (cytochrome subunit)(139.3)

TT-groupPhotosynthetic reaction centre (cytochrome subunit)(139.3.1)

FFamilyCytoC_RC(139.3.1.1)

Ligands

in contact, ≤ 4 Å

Ferroheme CHEC
drugDrugBank DB03317
Heptane-1,2,3-TriolHTO
drugDrugBank DB04079
Diacyl glycerol

Pfam Families

PF02276CytoC_RC

Photosynthetic reaction centre cytochrome C subunit

ClanCL0317Multiheme_cytos

External Links

ECOD PDB View: 5NJ4 RCSB PDB: 5NJ4 PDBe: 5NJ4 UniProt: P07173

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.