ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5gwiA3 - ECOD Domain | ECOD

ECOD/Domains/e5gwiA3

e5gwiA3

UID: 002103338

PDB

Range: A:733-861
PDB: 5GWI chain A(all domains)
UniProt: Q02880 (all domains)
Gene: TOP2B

Molecule: DNA topoisomerase 2-beta

3D Structure

Loading viewer...

Related Domains

Browse other domains in DNA_topoisoIV →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyDNA_topoisoIV(101.1.2.9)

Ligands

in contact, ≤ 4 Å

dichloro{4,5-di(amino-kappaN)-N-[9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydro-2H-furo[3',4':6,7]naphtho[2,3-d][1,3]dioxol-5-yl]pentanamide}platinumN2N
dichloro{4,5-di(amino-kappaN)-N-[9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydro-2H-furo[3',4':6,7]naphtho[2,3-d][1,3]dioxol-5-yl]pentanamide}platinumN2R

Pfam Families

PF00521DNA_topoisoIV

DNA gyrase/topoisomerase IV, subunit A

External Links

ECOD PDB View: 5GWI RCSB PDB: 5GWI PDBe: 5GWI UniProt: Q02880

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ion

metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.