ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vp0A1 - ECOD Domain | ECOD

ECOD/Domains/e5vp0A1

e5vp0A1

UID: 002103903

PDB

Range: A:583-916
PDB: 5VP0 chain A(all domains)
UniProt: O00408 (all domains)
Gene: PDE2A

Molecule: cGMP-dependent 3',5'-cyclic phosphodiesterase

3D Structure

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Related Domains

Browse other domains in PDEase_I →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupPDEase-like(131)

HH-groupHD-domain/PDEase-like(131.1)

TT-groupHD-domain/PDEase-like(131.1.1)

FFamilyPDEase_I(131.1.1.1)

Ligands

in contact, ≤ 4 Å

N-{(1S)-1-[3-fluoro-4-(trifluoromethoxy)phenyl]-2-methoxyethyl}-7-methoxy-2-oxo-2,3-dihydropyrido[2,3-b]pyrazine-4(1H)-carboxamide9GJ
Magnesium ionMG
metal
Zinc ionZN

Pfam Families

PF00233PDEase_I

3'5'-cyclic nucleotide phosphodiesterase

ClanCL0237HD_PDEase

External Links

ECOD PDB View: 5VP0 RCSB PDB: 5VP0 PDBe: 5VP0 UniProt: O00408

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.