ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xf9H2 - ECOD Domain | ECOD

ECOD/Domains/e5xf9H2

e5xf9H2

UID: 002104084

PDB

Range: H:59-101,H:382-428
PDB: 5XF9 chain H(all domains)
UniProt: A0A077LAI5 (all domains)
Gene: hoxH

Molecule: NAD-reducing hydrogenase

3D Structure

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Related Domains

Browse other domains in NiFeSe_Hases →

Classification

AArchitecturea+b two layers(a.11)

XX-groupFAD-linked reductases, C-terminal domain-like(244)

HH-groupNi-Fe binding domain in nickel-iron hydrogenase large subunit(244.4)

TT-groupNi-Fe binding domain in nickel-iron hydrogenase large subunit(244.4.1)

FFamilyNiFeSe_Hases(244.4.1.2)

Ligands

in contact, ≤ 4 Å

NICKEL (III) ION3NI
metal
CARBONMONOXIDE-(DICYANO) IRONFCO
Magnesium ionMG

Pfam Families

PF00374NiFeSe_Hases

Nickel-dependent hydrogenase

External Links

ECOD PDB View: 5XF9 RCSB PDB: 5XF9 PDBe: 5XF9 UniProt: A0A077LAI5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Iron/sulfur clusterSF4

Shown in the structure viewer. Drug annotations from DrugDomain.