ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5lpqB1 - ECOD Domain | ECOD

ECOD/Domains/e5lpqB1

e5lpqB1

UID: 002105362

PDB

Range: B:11-386
PDB: 5LPQ chain B(all domains)
UniProt: P28720 (all domains)
Gene: tgt

Molecule: Queuine tRNA-ribosyltransferase

3D Structure

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Related Domains

Browse other domains in TGT →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyTGT(2002.1.1.73)

Ligands

in contact, ≤ 4 Å

4-[2-[(3~{a}~{R},4~{R},6~{R},6~{a}~{R})-4-methoxy-2,2-dimethyl-3~{a},4,6,6~{a}-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]ethyl]-6-azanyl-2-(methylamino)-1,7-dihydroimidazo[4,5-g]quinazolin-8-one72C
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Queuine tRNA-ribosyltransferase

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5LPQ RCSB PDB: 5LPQ PDBe: 5LPQ UniProt: P28720

Downloads

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