ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5osnC1 - ECOD Domain | ECOD

ECOD/Domains/e5osnC1

e5osnC1

UID: 002105575

PDB

Range: C:1-243
PDB: 5OSN chain C(all domains)
UniProt: Q65480 (all domains)

Molecule: Capsid protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in Rhv →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

Glutamic acidGLU
drugDrugBank DB00142
octyl sulfateOSF
SphingosineSPH

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 5OSN RCSB PDB: 5OSN PDBe: 5OSN UniProt: Q65480

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Potassium ionK

metalwithin 5 Å only

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.