ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5tydA3 - ECOD Domain | ECOD

ECOD/Domains/e5tydA3

e5tydA3

UID: 002105630

PDB

Range: A:137-229
PDB: 5TYD chain A(all domains)
UniProt: Q9NP87 (all domains)
Gene: POLM

Molecule: DNA-directed DNA/RNA polymerase mu

3D Structure

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Related Domains

Browse other domains in HHH_8 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyHHH_8(102.1.1.30)

Ligands

in contact, ≤ 4 Å

1,4-DithiothreitolDTT
drugDrugBank DB04447

+ 2 additives (HEPES, 1,2-ETHANEDIOL)

HEPESEPE
DrugBank DB16872

Pfam Families

Helix-hairpin-helix domain

ClanCL0198HHH

External Links

ECOD PDB View: 5TYD RCSB PDB: 5TYD PDBe: 5TYD UniProt: Q9NP87

Downloads

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1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.