ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v2cJ1 - ECOD Domain | ECOD

ECOD/Domains/e5v2cJ1

e5v2cJ1

UID: 002105707

PDB

Range: J:2-40
PDB: 5V2C chain J(all domains)
UniProt: Q7DGD4 (all domains)
Gene: psbJ

Molecule: Photosystem II reaction center protein J

3D Structure

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Related Domains

Browse other domains in PsbJ →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II reaction center protein J, PsbJ(5031)

HH-groupPhotosystem II reaction center protein J, PsbJ(5031.1)

TT-groupPhotosystem II reaction center protein J, PsbJ(5031.1.1)

FFamilyPsbJ(5031.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Digalactosyl Diacyl Glycerol (Dgdg)DGD
drugDrugBank DB03426

Pfam Families

PsbJ

External Links

ECOD PDB View: 5V2C RCSB PDB: 5V2C PDBe: 5V2C UniProt: Q7DGD4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

Magnesium ionMG

metal

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

+ 4 additives (Triethylene glycol, 1,2-ETHANEDIOL, Dodecyl-beta-d-maltoside, …)

Triethylene glycolPGE
DrugBank DB02327
1,2-ETHANEDIOLEDO
Dodecyl-beta-d-maltosideLMT
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.