ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v2cU1 - ECOD Domain | ECOD

ECOD/Domains/e5v2cU1

e5v2cU1

UID: 002105719

PDB

Range: U:8-104
PDB: 5V2C chain U(all domains)
UniProt: P56152 (all domains)
Gene: psbU

Molecule: Photosystem II 12 kDa extrinsic protein

3D Structure

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Related Domains

Browse other domains in PsbU →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyPsbU(102.1.1.15)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
within 5 Å only

+ 3 additives (Glycerin, Triethylene glycol, Tetraethylene glycol)

GlycerinGOL
DrugBank DB09462
Triethylene glycol

Pfam Families

Photosystem II 12 kDa extrinsic protein (PsbU)

ClanCL0198HHH

External Links

ECOD PDB View: 5V2C RCSB PDB: 5V2C PDBe: 5V2C UniProt: P56152

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02327

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.