ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v2cY1 - ECOD Domain | ECOD

ECOD/Domains/e5v2cY1

e5v2cY1

UID: 002105723

PDB

Range: Y:18-46
PDB: 5V2C chain Y(all domains)
UniProt: D0VWR3 (all domains)
Gene: psb30

Molecule: Photosystem II reaction center protein Ycf12

3D Structure

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Related Domains

Browse other domains in PSII_Ycf12 →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II reaction center protein ycf12(3379)

HH-groupPhotosystem II reaction center protein ycf12(3379.1)

TT-groupPhotosystem II reaction center protein ycf12(3379.1.1)

FFamilyPSII_Ycf12(3379.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll aCLA
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

+ 3 additives (Triethylene glycol, Dodecyl-beta-d-maltoside, Tetraethylene glycol)

Triethylene glycol

Pfam Families

PF05969PSII_Ycf12

Photosystem II complex subunit Ycf12

External Links

ECOD PDB View: 5V2C RCSB PDB: 5V2C PDBe: 5V2C UniProt: D0VWR3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02327

Dodecyl-beta-d-maltosideLMT

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.