ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v2cx1 - ECOD Domain | ECOD

ECOD/Domains/e5v2cx1

e5v2cx1

UID: 002105726

PDB

Range: x:1-40
PDB: 5V2C chain x(all domains)
UniProt: D0VWR4 (all domains)
Gene: psbX

Molecule: Photosystem II reaction center protein X

3D Structure

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Related Domains

Browse other domains in PsbX →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II PsbX protein(3493)

HH-groupPhotosystem II PsbX protein(3493.1)

TT-groupPhotosystem II PsbX protein(3493.1.1)

FFamilyPsbX(3493.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

Pfam Families

Photosystem II reaction centre X protein (PsbX)

External Links

ECOD PDB View: 5V2C RCSB PDB: 5V2C PDBe: 5V2C UniProt: D0VWR4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Hexaethylene glycolP6G

2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEPL9

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

+ 4 additives (Triethylene glycol, Pentaethylene glycol, Dodecyl-beta-d-maltoside, …)

Triethylene glycolPGE
DrugBank DB02327
Pentaethylene glycol1PE
Dodecyl-beta-d-maltosideLMT
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.