ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v2cZ1 - ECOD Domain | ECOD

ECOD/Domains/e5v2cZ1

e5v2cZ1

UID: 002105727

PDB

Range: Z:1-62
PDB: 5V2C chain Z(all domains)
UniProt: D0VWR5 (all domains)
Gene: psbZ

Molecule: Photosystem II reaction center protein Z

3D Structure

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Related Domains

Browse other domains in Ycf9 →

Classification

AArchitectureextended segments(a.20)

XX-groupPsbZ-like(5044)

HH-groupPsbZ-like(5044.1)

TT-groupPsbZ-like(5044.1.1)

FFamilyYcf9(5044.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll aCLA
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

Pfam Families

YCF9

External Links

ECOD PDB View: 5V2C RCSB PDB: 5V2C PDBe: 5V2C UniProt: D0VWR5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Triethylene glycol)

Triethylene glycolPGE
DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.