ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5vyhA1 - ECOD Domain | ECOD

ECOD/Domains/e5vyhA1

e5vyhA1

UID: 002105793

PDB

Range: A:18-353
PDB: 5VYH chain A(all domains)
UniProt: K9N5Q8 (all domains)
Gene: S

Molecule: S protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in bCoV_S1_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilybCoV_S1_N(10.1.1.39)

Ligands

in contact, ≤ 4 Å

Folic acidFOL
drugDrugBank DB00158
N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 2 additives (Imidazole, (4r)-2-Methylpentane-2,4-Diol)

Pfam Families

PF16451bCoV_S1_N

Betacoronavirus-like spike glycoprotein S1, N-terminal

ClanCL0004Concanavalin

External Links

ECOD PDB View: 5VYH RCSB PDB: 5VYH PDBe: 5VYH UniProt: K9N5Q8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

ImidazoleIMD
DrugBank DB03366
(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.