ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xteH2 - ECOD Domain | ECOD

ECOD/Domains/e5xteH2

e5xteH2

UID: 002105964

PDB

Range: H:280-325
PDB: 5XTE chain H(all domains)
UniProt: P08574 (all domains)
Gene: CYC1

Molecule: Cytochrome c1, heme protein, mitochondrial

3D Structure

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Related Domains

Browse other domains in Cytochrom_C1 →

Classification

AArchitectureextended segments(a.20)

XX-groupcytochrome c1 transmembrane anchor(5013)

HH-groupcytochrome c1 transmembrane anchor(5013.1)

TT-groupcytochrome c1 transmembrane anchor(5013.1.1)

FFamilyCytochrom_C1(5013.1.1.1)

Ligands

in contact, ≤ 4 Å

Tetrastearoyl cardiolipinCDL
drugDrugBank DB03429
PhosphatidylethanolaminePEE
drugDrugBank DB04327

Pfam Families

PF02167Cytochrom_C1

Cytochrome C1 family

ClanCL0318Cytochrome-c

External Links

ECOD PDB View: 5XTE RCSB PDB: 5XTE PDBe: 5XTE UniProt: P08574

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL

Shown in the structure viewer. Drug annotations from DrugDomain.