ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ocsB1 - ECOD Domain | ECOD

ECOD/Domains/e5ocsB1

e5ocsB1

UID: 002114450

PDB

Range: B:1-371
PDB: 5OCS chain B(all domains)
UniProt: Q1LDQ5 (all domains)
Gene: Rmet_4859

Molecule: Putative NADH-depentdent flavin oxidoreductase

3D Structure

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Related Domains

Browse other domains in Oxidored_FMN →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyOxidored_FMN(2002.1.1.32)

Ligands

in contact, ≤ 4 Å

Flavin mononucleotideFMN
drugDrugBank DB03247

+ 2 additives (Citric acid, Acetate)

Citric acidCIT
DrugBank DB04272

Pfam Families

PF00724Oxidored_FMN

NADH:flavin oxidoreductase / NADH oxidase family

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5OCS RCSB PDB: 5OCS PDBe: 5OCS UniProt: Q1LDQ5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Acetate

DrugBank DB14511within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.