ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5u4pB1 - ECOD Domain | ECOD

ECOD/Domains/e5u4pB1

e5u4pB1

UID: 002114559

PDB

Range: B:24-159,B:194-217
PDB: 5U4P chain B(all domains)
UniProt: P43588 (all domains)
Gene: RPN11

Molecule: 26S proteasome regulatory subunit RPN11

3D Structure

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Related Domains

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Classification

AArchitecturea+b three layers(a.12)

XX-groupCytidine deaminase-like(2492)

HH-groupCytidine deaminase-like(2492.1)

TT-groupCytidine deaminase-like(2492.1.1)

FFamilyJAB(2492.1.1.2)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

JAB1/Mov34/MPN/PAD-1 ubiquitin protease

ClanCL0366JAB

External Links

ECOD PDB View: 5U4P RCSB PDB: 5U4P PDBe: 5U4P UniProt: P43588

Downloads

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