ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5o8eA1 - ECOD Domain | ECOD

ECOD/Domains/e5o8eA1

e5o8eA1

UID: 002117199

PDB

Range: A:3-219
PDB: 5O8E chain A(all domains)
UniProt: Q8PYK9 (all domains)
Gene: MM_0852

Molecule: Deoxyribodipyrimidine photolyase

3D Structure

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Related Domains

Browse other domains in DNA_photolyase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilyDNA_photolyase(2005.1.1.9)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, Glycerol)

Sulfate ionSO4
DrugBank DB14546
GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00875DNA_photolyase

DNA photolyase

ClanCL0039HUP

External Links

ECOD PDB View: 5O8E RCSB PDB: 5O8E PDBe: 5O8E UniProt: Q8PYK9

Downloads

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