ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ue3B1 - ECOD Domain | ECOD

ECOD/Domains/e5ue3B1

e5ue3B1

UID: 002117490

PDB

Range: B:108-269
PDB: 5UE3 chain B(all domains)
UniProt: P14780 (all domains)
Gene: MMP9

Molecule: Matrix metalloproteinase-9

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Zinc ionZN
metal

+ 2 additives (Sulfate ion, Tromethamine)

Sulfate ion

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 5UE3 RCSB PDB: 5UE3 PDBe: 5UE3 UniProt: P14780

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

TromethamineTRS

DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.