ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xtiBB1 - ECOD Domain | ECOD

ECOD/Domains/e5xtiBB1

e5xtiBB1

UID: 002117806

PDB

Range: BB:35-210
PDB: 5XTI chain BB(all domains)
UniProt: O00217 (all domains)
Gene: NDUFS8

Molecule: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial

3D Structure

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Related Domains

Browse other domains in Fer4+Fer4_7 →

Classification

AArchitecturea+b two layers(a.11)

XX-group4Fe-4S ferredoxin(205)

HH-group4Fe-4S ferredoxin(205.1)

TT-group4Fe-4S ferredoxin(205.1.1)

FFamilyFer4+Fer4_7(205.1.1.35)

Ligands

in contact, ≤ 4 Å

(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOLPLX
Iron/sulfur clusterSF4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

4Fe-4S binding domain

ClanCL03444Fe-4S

4Fe-4S dicluster domain

ClanCL03444Fe-4S

External Links

ECOD PDB View: 5XTI RCSB PDB: 5XTI PDBe: 5XTI UniProt: O00217

Downloads

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