ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5gxdA3 - ECOD Domain | ECOD

ECOD/Domains/e5gxdA3

e5gxdA3

UID: 002121237

PDB

Range: A:2-226
PDB: 5GXD chain A(all domains)
UniProt: A8LRC0 (all domains)
Gene: Dshi_0825

Molecule: AMP-dependent synthetase and ligase

3D Structure

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Related Domains

Browse other domains in AMP-binding,ACAS_N →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCoA-dependent acyltransferases(323)

HH-groupCoA-dependent acyltransferases(323.1)

TT-groupCoA-dependent acyltransferases(323.1.1)

FFamilyAMP-binding,ACAS_N(323.1.1.20)

Ligands

in contact, ≤ 4 Å

Coenzyme ACOA
drugDrugBank DB01992

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF00501AMP-binding

AMP-binding enzyme

ClanCL0378ANL

Acetyl-coenzyme A synthetase N-terminus

ClanCL0378ANL

External Links

ECOD PDB View: 5GXD RCSB PDB: 5GXD PDBe: 5GXD UniProt: A8LRC0

Downloads

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Drug annotations from DrugDomain.