ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nx6B1 - ECOD Domain | ECOD

ECOD/Domains/e5nx6B1

e5nx6B1

UID: 002121546

PDB

Range: B:4-330
PDB: 5NX6 chain B(all domains)
UniProt: B5GMG2 (all domains)
Gene: cnsA

Molecule: Pentalenene synthase

3D Structure

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Related Domains

Browse other domains in Terpene_syn_C_2 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTerpenoid synthases(141)

HH-groupTerpenoid synthases(141.1)

TT-groupTerpenoid synthases(141.1.1)

FFamilyTerpene_syn_C_2(141.1.1.8)

Ligands

in contact, ≤ 4 Å

Ethyl Dimethyl Ammonio Propane SulfonateNDS
drugDrugBank DB02618
2-ethyl-2-(hydroxymethyl)propane-1,3-diol9D2
(2E)-2-fluoro-3,7-dimethylocta-2,6-dien-1-yl trihydrogen diphosphate

Pfam Families

PF19086Terpene_syn_C_2

Terpene synthase family 2, C-terminal metal binding

ClanCL0613Terp_synthase

External Links

ECOD PDB View: 5NX6 RCSB PDB: 5NX6 PDBe: 5NX6 UniProt: B5GMG2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.