ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nb3F1 - ECOD Domain | ECOD

ECOD/Domains/e5nb3F1

e5nb3F1

UID: 002123072

PDB

Range: F:1-164
PDB: 5NB3 chain F(all domains)
UniProt: A0A0E3W010 (all domains)
Gene: cpeA

Molecule: Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit

3D Structure

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Related Domains

Browse other domains in Phycobilisome →

Classification

AArchitecturealpha arrays(a.6)

XX-groupGlobin-like(106)

HH-groupGlobin-like(106.1)

TT-groupGlobin-like(106.1.1)

FFamilyPhycobilisome(106.1.1.2)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal
PhycoerythrobilinPEB

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

Pfam Families

PF00502Phycobilisome

Phycobilisome protein

ClanCL0090Globin

External Links

ECOD PDB View: 5NB3 RCSB PDB: 5NB3 PDBe: 5NB3 UniProt: A0A0E3W010

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-DiolMPD

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.