ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nb4M1 - ECOD Domain | ECOD

ECOD/Domains/e5nb4M1

e5nb4M1

UID: 002123103

PDB

Range: M:1-184
PDB: 5NB4 chain M(all domains)
UniProt: A0A0E4G455 (all domains)
Gene: cpeB

Molecule: Phycoerythrin Beta subunit,Phycoerythrin Beta subunit

3D Structure

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Related Domains

Browse other domains in Phycobilisome →

Classification

AArchitecturealpha arrays(a.6)

XX-groupGlobin-like(106)

HH-groupGlobin-like(106.1)

TT-groupGlobin-like(106.1.1)

FFamilyPhycobilisome(106.1.1.2)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
PhycoerythrobilinPEB
Hydrogenphosphate ionPI

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

Pfam Families

PF00502Phycobilisome

Phycobilisome protein

ClanCL0090Globin

External Links

ECOD PDB View: 5NB4 RCSB PDB: 5NB4 PDBe: 5NB4 UniProt: A0A0E4G455

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-DiolMPD

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.