ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vdtB2 - ECOD Domain | ECOD

ECOD/Domains/e5vdtB2

e5vdtB2

UID: 002123330

PDB

Range: B:160-395
PDB: 5VDT chain B(all domains)
UniProt: Q8N884 (all domains)
Gene: CGAS

Molecule: Cyclic GMP-AMP synthase

3D Structure

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Related Domains

Browse other domains in Mab-21 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNucleotidyltransferase-like(316)

HH-groupNucleotidyltransferase(316.1)

TT-groupNucleotidyltransferase(316.1.1)

FFamilyMab-21(316.1.1.6)

Ligands

in contact, ≤ 4 Å

2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one4BW
Zinc ionZN
metal

Shown in the structure viewer.

Pfam Families

Mab-21 protein nucleotidyltransferase domain

ClanCL0260NTP_transf

External Links

ECOD PDB View: 5VDT RCSB PDB: 5VDT PDBe: 5VDT UniProt: Q8N884

Downloads

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Drug annotations from DrugDomain.