ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5gp0I1 - ECOD Domain | ECOD

ECOD/Domains/e5gp0I1

e5gp0I1

UID: 002123631

PDB

Range: I:6-144
PDB: 5GP0 chain I(all domains)
UniProt: Q9CA40 (all domains)
Gene: NUDT1

Molecule: Nudix hydrolase 1

3D Structure

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Related Domains

Browse other domains in NUDIX →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupNudix(221.4)

TT-groupNudix(221.4.1)

FFamilyNUDIX(221.4.1.1)

Ligands

in contact, ≤ 4 Å

Geranyl DiphosphateGPP
drugDrugBank DB02552

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

NUDIX domain

ClanCL0261NUDIX

External Links

ECOD PDB View: 5GP0 RCSB PDB: 5GP0 PDBe: 5GP0 UniProt: Q9CA40

Downloads

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Drug annotations from DrugDomain.