ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5wqtB1 - ECOD Domain | ECOD

ECOD/Domains/e5wqtB1

e5wqtB1

UID: 002124161

PDB

Range: B:2-207
PDB: 5WQT chain B(all domains)
UniProt: P57764 (all domains)
Gene: GSDMD

Molecule: Gasdermin-D

3D Structure

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Related Domains

Browse other domains in Gasdermin_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupR3H domain-like(320)

HH-groupPUB domain(320.4)

TT-groupPUB domain(320.4.1)

FFamilyGasdermin_C(320.4.1.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Citric acid, Glycerin)

Citric acidCIT
DrugBank DB04272
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF17708Gasdermin_C

Gasdermin PUB domain

External Links

ECOD PDB View: 5WQT RCSB PDB: 5WQT PDBe: 5WQT UniProt: P57764

Downloads

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