ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ohoB2 - ECOD Domain | ECOD

ECOD/Domains/e5ohoB2

e5ohoB2

UID: 002125021

PDB

Range: B:534-580
PDB: 5OHO chain B(all domains)
UniProt: O00267 (all domains)
Gene: SUPT5H

Molecule: Transcription elongation factor SPT5

3D Structure

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Related Domains

Browse other domains in KOWx_SPT5 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyKOWx_SPT5(4.1.1.236)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF23037KOWx_SPT5

Transcription elongation factor SPT5, KOWx domain

ClanCL0010SH3

External Links

ECOD PDB View: 5OHO RCSB PDB: 5OHO PDBe: 5OHO UniProt: O00267

Downloads

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