ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y89A1 - ECOD Domain | ECOD

ECOD/Domains/e5y89A1

e5y89A1

UID: 002125835

PDB

Range: A:164-284
PDB: 5Y89 chain A(all domains)
UniProt: B4EKB3 (all domains)
Gene: hmuT

Molecule: Putative hemin transport system, substrate-binding protein

3D Structure

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Related Domains

Browse other domains in Peripla_BP_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupChelatase-like(2007.1.14)

FFamilyPeripla_BP_2(2007.1.14.5)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer.

Pfam Families

PF01497Peripla_BP_2

Periplasmic binding protein

ClanCL0043Chelatase

External Links

ECOD PDB View: 5Y89 RCSB PDB: 5Y89 PDBe: 5Y89 UniProt: B4EKB3

Downloads

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Drug annotations from DrugDomain.