ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3m6zA3 - ECOD Domain | ECOD

ECOD/Domains/e3m6zA3

e3m6zA3

UID: 002126917

PDB

Range: A:180-293
PDB: 3M6Z chain A(all domains)
UniProt: Q977W1 (all domains)
Gene: top5

Molecule: Topoisomerase V

3D Structure

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Related Domains

Browse other domains in HTH_AsnC-type →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilyHTH_AsnC-type(101.1.1.61)

Ligands

in contact, ≤ 4 Å

GuanidineGAI
Magnesium ionMG
metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4

Pfam Families

PF13404HTH_AsnC-type

AsnC-type helix-turn-helix domain

ClanCL0123HTH

External Links

ECOD PDB View: 3M6Z RCSB PDB: 3M6Z PDBe: 3M6Z UniProt: Q977W1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.