ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vdzA2 - ECOD Domain | ECOD

ECOD/Domains/e1vdzA2

e1vdzA2

UID: 002127519

PDB

Range: A:60-445
PDB: 1VDZ chain A(all domains)
UniProt: O57728 (all domains)
Gene: atpA

Molecule: A-type ATPase subunit A

3D Structure

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Related Domains

Browse other domains in ATP-synt_ab,ATP-synt_ab_Xtn →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyATP-synt_ab,ATP-synt_ab_Xtn(2004.1.1.12)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00006ATP-synt_ab

ATP synthase alpha/beta family, nucleotide-binding domain

ClanCL0023P-loop_NTPase

PF16886ATP-synt_ab_Xtn

ATPsynthase alpha/beta subunit barrel-sandwich domain

ClanCL0105Hybrid

External Links

ECOD PDB View: 1VDZ RCSB PDB: 1VDZ PDBe: 1VDZ UniProt: O57728

Downloads

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