ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vpbA1 - ECOD Domain | ECOD

ECOD/Domains/e3vpbA1

e3vpbA1

UID: 002127530

PDB

Range: A:87-281
PDB: 3VPB chain A(all domains)
UniProt: Q970U6 (all domains)
Gene: argX

Molecule: Putative acetylornithine deacetylase

3D Structure

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Related Domains

Browse other domains in RimK →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyRimK(206.1.3.21)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Glutamic acidGLU
drugDrugBank DB00142
Magnesium ion

Pfam Families

RimK-like ATP-grasp domain

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 3VPB RCSB PDB: 3VPB PDBe: 3VPB UniProt: Q970U6

Downloads

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metal

Zinc ionZN

metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.