ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ejkB4 - ECOD Domain | ECOD

ECOD/Domains/e5ejkB4

e5ejkB4

UID: 002127980

PDB

Range: B:1-44
PDB: 5EJK chain B(all domains)
UniProt: P03354 (all domains)
Gene: gag-pol

Molecule: Gag-Pro-Pol polyprotein

3D Structure

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Related Domains

Browse other domains in Integrase_Zn →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilyIntegrase_Zn(101.1.1.14)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02022Integrase_Zn

Integrase Zinc binding domain

ClanCL0123HTH

External Links

ECOD PDB View: 5EJK RCSB PDB: 5EJK PDBe: 5EJK UniProt: P03354

Downloads

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