ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5pnlA1 - ECOD Domain | ECOD

ECOD/Domains/e5pnlA1

e5pnlA1

UID: 002128886

PDB

Range: A:11-341
PDB: 5PNL chain A(all domains)
UniProt: Q6B0I6 (all domains)
Gene: KDM4D

Molecule: Lysine-specific demethylase 4D

3D Structure

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Related Domains

Browse other domains in JmjC,JmjN →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC,JmjN(10.12.1.10)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
NICKEL (II) IONNI
metal
N-oxalylglycineOGA

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

jmjN domain

ClanCL0029Cupin

External Links

ECOD PDB View: 5PNL RCSB PDB: 5PNL PDBe: 5PNL UniProt: Q6B0I6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Zinc ionZN

metal

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.