ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vg3C1 - ECOD Domain | ECOD

ECOD/Domains/e5vg3C1

e5vg3C1

UID: 002129548

PDB

Range: C:235-382
PDB: 5VG3 chain C(all domains)
UniProt: O34714 (all domains)
Gene: oxdC

Molecule: Oxalate decarboxylase

3D Structure

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Related Domains

Browse other domains in Cupin_1 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyCupin_1(10.12.1.3)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal

+ 2 additives (Acetate, (4S)-2-METHYL-2,4-PENTANEDIOL)

AcetateACT
DrugBank DB14511
(4S)-2-METHYL-2,4-PENTANEDIOLMPD

Shown in the structure viewer. Drug annotations from .

Pfam Families

PF00190Cupin_1

Cupin

ClanCL0029Cupin

External Links

ECOD PDB View: 5VG3 RCSB PDB: 5VG3 PDBe: 5VG3 UniProt: O34714

Downloads

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