ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vpmB2 - ECOD Domain | ECOD

ECOD/Domains/e5vpmB2

e5vpmB2

UID: 002129583

PDB

Range: B:1-182
PDB: 5VPM chain B(all domains)
UniProt: P00797 (all domains)
Gene: REN

Molecule: Renin

3D Structure

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Related Domains

Browse other domains in Asp, TAXi_N →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyAsp, TAXi_N(1.1.1.27)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
methyl [(4S)-4-(3'-ethyl-6-fluoro[1,1'-biphenyl]-2-yl)-4-hydroxy-4-{(3R)-1-[(piperidin-4-yl)acetyl]piperidin-3-yl}butyl]carbamate9G7

+ 1 additive (Sulfate ion)

Pfam Families

Eukaryotic aspartyl protease

ClanCL0129Peptidase_AA

Xylanase inhibitor N-terminal

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 5VPM RCSB PDB: 5VPM PDBe: 5VPM UniProt: P00797

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.