ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nhmC1 - ECOD Domain | ECOD

ECOD/Domains/e5nhmC1

e5nhmC1

UID: 002130388

PDB

Range: C:3-437
PDB: 5NHM chain C(all domains)
UniProt: Q9P8C9 (all domains)

Molecule: Xylose isomerase

3D Structure

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Related Domains

Browse other domains in AP_endonuc_2, XylA2_C →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyAP_endonuc_2, XylA2_C(2002.1.1.271)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01261AP_endonuc_2

Xylose isomerase-like TIM barrel

ClanCL0036TIM_barrel

PF27526XylA2_C

XylA2 C-terminal domain

External Links

ECOD PDB View: 5NHM RCSB PDB: 5NHM PDBe: 5NHM UniProt: Q9P8C9

Downloads

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