ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5o9jA1 - ECOD Domain | ECOD

ECOD/Domains/e5o9jA1

e5o9jA1

UID: 002130464

PDB

Range: A:0-126,A:134-181
PDB: 5O9J chain A(all domains)
UniProt: Q58192 (all domains)
Gene: tfb

Molecule: Transcription initiation factor IIB,Transcription initiation factor IIB

3D Structure

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Related Domains

Browse other domains in Intein_splicing →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupHedgehog/intein(69)

HH-groupHedgehog/intein(69.1)

TT-groupHint(69.1.1)

FFamilyIntein_splicing(69.1.1.4)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (1,4-Dioxane, Glycerin, Ammonium ion)

1,4-DioxaneDIO
DrugBank DB03316
GlycerinGOL
DrugBank DB09462
Ammonium ion

Pfam Families

PF14890Intein_splicing

Intein splicing domain

ClanCL0363H-int

External Links

ECOD PDB View: 5O9J RCSB PDB: 5O9J PDBe: 5O9J UniProt: Q58192

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.