ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xj1A2 - ECOD Domain | ECOD

ECOD/Domains/e5xj1A2

e5xj1A2

UID: 002130766

RepresentativePDB

Range: A:71-453
PDB: 5XJ1 chain A(all domains)
UniProt: Q97R12 (all domains)
Gene: SP_1029

Molecule: Uncharacterized RNA methyltransferase SP_1029

3D Structure

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Related Domains

Browse other domains in TRM5-TYW2_MTfase, tRNA_U5-meth_tr →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyTRM5-TYW2_MTfase, tRNA_U5-meth_tr(2003.1.5.196)

Ligands

in contact, ≤ 4 Å

Hexaethylene glycolP6G

+ 2 additives (HEPES, Glycerin)

HEPESEPE
DrugBank DB16872
GlycerinGOL

Pfam Families

PF02475TRM5-TYW2_MTfase

TRM5/TYW2 methyltransferase domain

ClanCL0063NADP_Rossmann

PF05958tRNA_U5-meth_tr

tRNA (Uracil-5-)-methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5XJ1 RCSB PDB: 5XJ1 PDBe: 5XJ1 UniProt: Q97R12

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.