ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ppbD5 - ECOD Domain | ECOD

ECOD/Domains/e2ppbD5

e2ppbD5

UID: 002131341

PDB

Range: D:949-1109
PDB: 2PPB chain D(all domains)
UniProt: Q8RQE8 (all domains)
Gene: rpoC

Molecule: DNA-directed RNA polymerase beta' chain

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupsecond helical domain in RNA-polymerase beta-prime subunit(4958)

HH-groupsecond helical domain in RNA-polymerase beta-prime subunit(4958.1)

TT-groupsecond helical domain in RNA-polymerase beta-prime subunit(4958.1.1)

FFamilyRNA_pol_Rpb1_5,RNA_pol_Rpb1_4(4958.1.1.1)

Ligands

in contact, ≤ 4 Å

alpha,beta-Methyleneadenosine 5'-triphosphateAPC
drugDrugBank DB02596
StreptolydiginSTD
drugDrugBank DB04785

Pfam Families

PF04998RNA_pol_Rpb1_5

RNA polymerase Rpb1, domain 5

PF05000RNA_pol_Rpb1_4

RNA polymerase Rpb1, domain 4

External Links

ECOD PDB View: 2PPB RCSB PDB: 2PPB PDBe: 2PPB UniProt: Q8RQE8

Downloads

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Magnesium ionMG

metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.